MolNFT v1 · #5095 · protein
Endonuclease VII (endovii) N62D mutant from phage T4
1E7L · Recombination endonuclease VII: “Endonuclease VII (endovii) N62D mutant from phage T4”. X-ray diffraction, 2 ligands (ZN, SO4), 2 pockets (best druggability 0.46). MolNFT v1 #5095 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1E7L
- Type
- protein
- Length
- 314 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Recombination endonuclease VII
- EC
- 3.1.22.4
- UniProt
- P13340
- Ligands
- ZN, SO4
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 54% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Recombination endonuclease VII (EC 3.1.22.4) | protein | 157 | 54% helix, 9% strand | P13340 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 143 | 0.46 | 0.77 | 24 | SO4 |
| 2 | 111 | 0.38 | 0.75 | 15 | SO4 |
Interfaces
1 interface between chains.
- A–B · 3452 Ų buried · 34 hydrogen bonds · protein-protein
Compared structures
- 1E7L · Endonuclease VII (EndoVII) N62D mutant from phage T4 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P13340
- Elsewhere: RCSB PDB 1E7L · PDBe 1E7L · UniProt P13340
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