MolNFT v1 · #50898 · protein
Differences in the metal ion structure between sr-and ca-prothrombin fragment 1
2SPT: “Differences in the metal ion structure between sr-and ca-prothrombin fragment 1”. X-ray diffraction, 2 ligands (NAG, SR). MolNFT v1 #50898 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2SPT
- Type
- protein
- Length
- 145 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prothrombin
- EC
- 3.4.21.5
- UniProt
- P00735
- Ligands
- NAG, SR
Structure
x-ray diffraction · 1 distinct chain · 24% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prothrombin (EC 3.4.21.5) | protein | 145 | 24% helix, 8% strand | P00735 |
Ligands and binding sites
- NAG · 2-acetamido-2-deoxy-beta-D-glucopyranose · sugar · chains A
- SR · Strontium ion · metal · 8 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 10 modified, 5 disulfide, 1 glycan (carboxylation, disulfide, N-glycosylation).
Compared structures
- 2SPT · Differences in the metal ion structure between sr-and ca-prothrombin fragment 1 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00735
- Elsewhere: RCSB PDB 2SPT · PDBe 2SPT · UniProt P00735
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