MolNFT v1 · #50766 · DNA

Structure of metallo-DNA in solution

2RT8 · DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'): “Structure of metallo-DNA in solution”. Solution nmr, 1 ligand (HG). MolNFT v1 #50766 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2RT8
Type: DNA
Length: 20 nucleotides
Chains: 2
Method: solution nmr
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: DNA (5'-D(*CP*GP*CP*GP*TP*TP*GP*TP*CP*C)-3'); DNA (5'-D(*GP*GP*AP*CP*TP*TP*CP*GP*CP*G)-3')
Ligands: HG

Structure

solution nmr · 2 distinct chains.

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	DNA (5'-D(CPGPCPGPTPTPGPTPCPC)-3')	dna	10	—	—
B	DNA (5'-D(GPGPAPCPTPTPCPGPCPG)-3')	dna	10	—	—

Ligands and binding sites

HG · Mercury (II) ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 483 Å² buried · 31 hydrogen bonds · nucleic-nucleic

Compared structures

2RT8 · Structure of metallo-dna in solution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 2RT8 · PDBe 2RT8

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