MolNFT v1 · #50498 · protein

Crystal structure of GLYOXYLASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain from frankia sp. EAN1PEC

2RK0 · GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain: “Crystal structure of GLYOXYLASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain from frankia sp. EAN1PEC”. X-ray diffraction, 2 pockets (best druggability 0.38). MolNFT v1…

PDB: 2RK0
Type: protein
Length: 262 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain
UniProt: Q3W3Y2
Pockets: 2 · best druggability 0.38

Structure

x-ray diffraction · 2 distinct chains · 19% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain	protein	135	19% helix, 43% strand	Q3W3Y2
B	GLYOXALASE/BLEOMYCIN resistance PROTEIN/DIOXYGENASE domain	protein	127	20% helix, 48% strand	Q3W3Y2

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	132	0.38	0.73	26	empty
2	104	0.34	0.73	25	empty

Interfaces

1 interface between chains.

A–B · 2089 Å² buried · 55 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2RK0 · Crystal structure of glyoxylase/bleomycin resistance protein/dioxygenase domain from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q3W3Y2
Elsewhere: RCSB PDB 2RK0 · PDBe 2RK0 · UniProt Q3W3Y2

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