MolNFT v1 · #50292 · protein

Crystal structure of a putative glycoside hydrolase family protein from bacillus halodurans

2RDY · BH0842 protein: “Crystal structure of a putative glycoside hydrolase family protein from bacillus halodurans”. X-ray diffraction, 20 pockets (best druggability 0.82). MolNFT v1 #50292 on GenesisL1: 3D structure, binding sites and…

PDB: 2RDY
Type: protein
Length: 1,574 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: BH0842 protein
UniProt: Q9KEL0
Pockets: 20 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	BH0842 protein	protein	787	32% helix, 27% strand	Q9KEL0

Pockets

20 pockets found on a 1 Å grid, 10 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1021	0.82	0.83	100	empty
2	64	0.74	0.99	15	empty
3	72	0.74	0.98	18	empty
4	149	0.63	0.85	21	empty
5	137	0.61	0.85	18	empty

Interfaces

1 interface between chains.

A–B · 1664 Å² buried · 18 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 36 modified (engineered).

Compared structures

2RDY · Crystal structure of a putative glycoside hydrolase family protein from Bacillus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9KEL0
Elsewhere: RCSB PDB 2RDY · PDBe 2RDY · UniProt Q9KEL0

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