MolNFT v1 · #50270 · protein
Crystal structure of a putative lipid binding protein (GSU0061) from geobacter sulfurreducens pca at 1.80 a resolution
2RDC · Uncharacterized protein: “Crystal structure of a putative lipid binding protein (GSU0061) from geobacter sulfurreducens pca at 1.80 a…”. X-ray diffraction, 2 ligands (CL, SO4), 2 pockets (best druggability 0.38). MolNFT v1 #50270 on…
- PDB
- 2RDC
- Type
- protein
- Length
- 268 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q74H32
- Ligands
- CL, SO4
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 76% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein | protein | 133 | 75% helix, 0% strand | Q74H32 |
| B | Uncharacterized protein | protein | 135 | 78% helix, 0% strand | Q74H32 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A, B
- SO4 · Sulfate ion · ion · 2 copies · chains B
- MPD · (4S)-2-methyl-2,4-pentanediol · additive · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 59 | 0.38 | 0.80 | 15 | empty |
| 2 | 58 | 0.30 | 0.75 | 13 | SO4 |
Interfaces
1 interface between chains.
- A–B · 1803 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2RDC · Crystal structure of a putative lipid binding protein (GSU0061) from geobacter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q74H32
- Elsewhere: RCSB PDB 2RDC · PDBe 2RDC · UniProt Q74H32
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