MolNFT v1 · #50202 · protein

Crystal structure of a putative ribokinase from agrobacterium tumefaciens

2RBC · Sugar kinase: “Crystal structure of a putative ribokinase from agrobacterium tumefaciens”. X-ray diffraction, 2 ligands (SO4, CL), 1 pocket (best druggability 0.67). MolNFT v1 #50202 on GenesisL1: 3D structure, binding sites and…

PDB: 2RBC
Type: protein
Length: 306 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Sugar kinase
EC: 2.7.1.-
UniProt: Q8UCH8
Ligands: SO4, CL
Pockets: 1 · best druggability 0.67

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Sugar kinase (EC 2.7.1.-)	protein	306	40% helix, 24% strand	Q8UCH8

Ligands and binding sites

SO4 · Sulfate ion · ion · 5 copies · chains A
CL · Chloride ion · ion · chains A
EDO · 1,2-ethanediol · additive · 5 copies · chains A
GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	465	0.67	0.78	54	EDO, GOL

Modifications

Observed in the structure: 9 modified (engineered).

Compared structures

2RBC · Crystal structure of a putative ribokinase from Agrobacterium tumefaciens · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8UCH8
Elsewhere: RCSB PDB 2RBC · PDBe 2RBC · UniProt Q8UCH8

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