MolNFT v1 · #50060 · protein

Crystal structure of the rare lipoprotein B (SO_1173) from shewanella oneidensis, northeast structural genomics consortium target SOR91A

2R76: “Crystal structure of the rare lipoprotein B (SO_1173) from shewanella oneidensis, northeast structural…”. X-ray diffraction, 2 pockets (best druggability 0.40). MolNFT v1 #50060 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 2R76
Type: protein
Length: 261 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Rare lipoprotein B
UniProt: Q8EHP5
Pockets: 2 · best druggability 0.40

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Rare lipoprotein B	protein	132	35% helix, 39% strand	Q8EHP5
B	Rare lipoprotein B	protein	129	32% helix, 41% strand	Q8EHP5

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	91	0.40	0.77	21	empty
2	73	0.35	0.77	16	empty

Interfaces

1 interface between chains.

A–B · 857 Å² buried · 14 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

2R76 · Crystal structure of the rare lipoprotein B (SO_1173) from Shewanella oneidensis… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EHP5
Elsewhere: RCSB PDB 2R76 · PDBe 2R76 · UniProt Q8EHP5

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