MolNFT v1 · #50056 · protein

Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with MG2+ ion.

2R72: “Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with MG2+ ion.”. X-ray diffraction, 1 ligand (MG), 13 pockets (best druggability 0.76). MolNFT v1 #50056 on GenesisL1: 3D structure, binding sites and…

PDB: 2R72
Type: protein
Length: 765 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Infectious bursal disease virus VP1 polymerase
UniProt: Q9Q6Q5
Ligands: MG
Pockets: 13 · best druggability 0.76

Structure

x-ray diffraction · 1 distinct chain · 45% helix, 15% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Infectious bursal disease virus VP1 polymerase	protein	765	45% helix, 15% strand	Q9Q6Q5

Ligands and binding sites

MG · Magnesium ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

13 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	973	0.76	0.79	88	MG
2	146	0.57	0.82	17	empty
3	198	0.55	0.79	28	empty
4	70	0.53	0.86	19	empty
5	159	0.50	0.78	27	empty

Compared structures

2R72 · Crystal structure of infectious bursal disease virus VP1 polymerase, incubated with Mg2+… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9Q6Q5
Elsewhere: RCSB PDB 2R72 · PDBe 2R72 · UniProt Q9Q6Q5

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