MolNFT v1 · #49954 · protein

Crystal structure of mouse ip-10

2R3Z · Small-inducible cytokine B10: “Crystal structure of mouse ip-10”. X-ray diffraction, 5 pockets (best druggability 0.48). MolNFT v1 #49954 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2R3Z
Type: protein
Length: 264 residues
Chains: 4
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Small-inducible cytokine B10
UniProt: P17515
Pockets: 5 · best druggability 0.48

Structure

x-ray diffraction · 4 distinct chains · 12% helix, 30% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Small-inducible cytokine B10	protein	68	10% helix, 28% strand	P17515
B	Small-inducible cytokine B10	protein	67	10% helix, 34% strand	P17515
C	Small-inducible cytokine B10	protein	65	11% helix, 29% strand	P17515
D	Small-inducible cytokine B10	protein	64	16% helix, 30% strand	P17515

Pockets

5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.48	0.81	17	empty
2	99	0.47	0.80	25	empty
3	150	0.41	0.74	32	empty
4	98	0.38	0.76	17	empty
5	61	0.29	0.75	16	empty

Interfaces

3 interfaces between chains.

A–B · 956 Å² buried · 12 hydrogen bonds · protein-protein
A–D · 637 Å² buried · 7 hydrogen bonds · protein-protein
B–C · 586 Å² buried · 8 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 disulfide (disulfide).

Compared structures

2R3Z · Crystal structure of mouse IP-10 · the same entry in another collection · chain D against D, TM-score 1.00
P17515 · AlphaFold monomer V2.0 prediction for C-X-C motif chemokine 10 (P17515) · a predicted model of the same protein · chain D against A, TM-score 0.89

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P17515
Elsewhere: RCSB PDB 2R3Z · PDBe 2R3Z · UniProt P17515

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