MolNFT v1 · #49760 · protein

Crystal structure of the N-terminal domain of UPF0209 protein yfck from escherichia COLI O157:H7

2QY6: “Crystal structure of the N-terminal domain of UPF0209 protein yfck from escherichia COLI O157:H7”. X-ray diffraction, 1 pocket (best druggability 0.86). MolNFT v1 #49760 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2QY6
Type: protein
Length: 488 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UPF0209 protein yfck
UniProt: Q8XCQ7
Pockets: 1 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 36% helix, 26% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	UPF0209 protein yfck	protein	244	36% helix, 26% strand	Q8XCQ7

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1157	0.86	0.87	125	empty

Interfaces

1 interface between chains.

A–B · 1147 Å² buried · 28 hydrogen bonds · protein-protein

Compared structures

2QY6 · Crystal structure of the N-terminal domain of UPF0209 protein yfcK from Escherichia coli… · the same entry in another collection · chain A against A, TM-score 1.00
Q8XCQ7 · AlphaFold monomer V2.0 prediction for tRNA 5-methylaminomethyl-2-thiouridine biosynthesis… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8XCQ7
Elsewhere: RCSB PDB 2QY6 · PDBe 2QY6 · UniProt Q8XCQ7

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