MolNFT v1 · #49608 · protein
Crystal structure of a GTP-binding protein from the hyperthermophilic archaeon sulfolobus solfataricus
2QTF: “Crystal structure of a GTP-binding protein from the hyperthermophilic archaeon sulfolobus solfataricus”. X-ray diffraction, 2 ligands (CD, SO4), 1 pocket (best druggability 0.60). MolNFT v1 #49608 on GenesisL1: 3D structure, binding…
- PDB
- 2QTF
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GTP-binding protein
- UniProt
- Q980M3
- Ligands
- CD, SO4
- Pockets
- 1 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | GTP-binding protein | protein | 311 | 51% helix, 20% strand | Q980M3 |
Ligands and binding sites
- CD · Cadmium ion · metal · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A
- ACT · Acetate ion · additive · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 207 | 0.60 | 0.81 | 39 | CD, SO4, ACT |
Compared structures
- 2QTF · Crystal structure of a GTP-binding protein from the hyperthermophilic archaeon Sulfolobus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q980M3 · AlphaFold monomer V2.0 prediction for GTPase hflx (Q980M3) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q980M3
- Elsewhere: RCSB PDB 2QTF · PDBe 2QTF · UniProt Q980M3
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