MolNFT v1 · #49489 · protein
Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from lactobacillus casei atcc 334 at 1.40 a resolution
2QPX · Predicted metal-dependent hydrolase of the tim-barrel fold: “Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from lactobacillus casei atcc 334 at…”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability…
- PDB
- 2QPX
- Type
- protein
- Length
- 376 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Predicted metal-dependent hydrolase of the tim-barrel fold
- UniProt
- Q03BX7
- Ligands
- ZN
- Pockets
- 1 · best druggability 0.61
Structure
x-ray diffraction · 1 distinct chain · 53% helix, 11% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Predicted metal-dependent hydrolase of the tim-barrel fold | protein | 376 | 53% helix, 11% strand | Q03BX7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 350 | 0.61 | 0.78 | 33 | empty |
Modifications
Observed in the structure: 9 modified (engineered, carboxylation).
Compared structures
- 2QPX · Crystal structure of putative metal-dependent hydrolase (YP_805737.1) from Lactobacillus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q03BX7
- Elsewhere: RCSB PDB 2QPX · PDBe 2QPX · UniProt Q03BX7
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