MolNFT v1 · #49233 · protein
Structural basis of octanoic acid recognition by lipoate-protein ligase B
2QHV · Lipoyltransferase: “Structural basis of octanoic acid recognition by lipoate-protein ligase B”. X-ray diffraction, 1 ligand (OC9), 1 pocket (best druggability 0.65). MolNFT v1 #49233 on GenesisL1: 3D structure, binding sites and…
- PDB
- 2QHV
- Type
- protein
- Length
- 210 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Lipoyltransferase
- EC
- 2.3.1.-
- UniProt
- Q5SLQ3
- Ligands
- OC9
- Pockets
- 1 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Lipoyltransferase (EC 2.3.1.-) | protein | 210 | 33% helix, 30% strand | Q5SLQ3 |
Ligands and binding sites
- OC9 · Octan-1-ol · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 323 | 0.65 | 0.81 | 52 | OC9 |
Compared structures
- 2QHV · Structural Basis of Octanoic Acid Recognition by Lipoate-Protein Ligase B · the same entry in another collection · chain A against A, TM-score 1.00
- Q5SLQ3 · AlphaFold monomer V2.0 prediction for octanoyltransferase (Q5SLQ3) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5SLQ3
- Elsewhere: RCSB PDB 2QHV · PDBe 2QHV · UniProt Q5SLQ3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.