MolNFT v1 · #49215 · protein
The crystal structure of a protein of unknown function from archaeoglobus fulgidus dsm 4304
2QH9 · UPF0215 protein AF_1433: “The crystal structure of a protein of unknown function from archaeoglobus fulgidus dsm 4304”. X-ray diffraction, 4 pockets (best druggability 0.50). MolNFT v1 #49215 on GenesisL1: 3D structure, binding…
- PDB
- 2QH9
- Type
- protein
- Length
- 351 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- UPF0215 protein AF_1433
- UniProt
- O28839
- Pockets
- 4 · best druggability 0.50
Structure
x-ray diffraction · 2 distinct chains · 35% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | UPF0215 protein AF_1433 | protein | 178 | 35% helix, 29% strand | O28839 |
| B | UPF0215 protein AF_1433 | protein | 173 | 35% helix, 30% strand | O28839 |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 205 | 0.50 | 0.76 | 29 | empty |
| 2 | 164 | 0.43 | 0.74 | 26 | empty |
| 3 | 65 | 0.36 | 0.78 | 16 | empty |
| 4 | 62 | 0.35 | 0.78 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 828 Ų buried · 10 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 11 modified (engineered).
Compared structures
- 2QH9 · The crystal structure of a protein of unknown function from Archaeoglobus fulgidus DSM… · the same entry in another collection · chain A against A, TM-score 1.00
- O28839 · AlphaFold monomer V2.0 prediction for UPF0215 protein AF_1433 (O28839) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O28839
- Elsewhere: RCSB PDB 2QH9 · PDBe 2QH9 · UniProt O28839
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