MolNFT v1 · #49206 · protein
Crystal structure of a putative primosome component from streptococcus pyogenes serotype M3. northeast structural genomics target DR58
2QGZ: “Crystal structure of a putative primosome component from streptococcus pyogenes serotype M3. northeast…”. X-ray diffraction, 1 ligand (PO4), 2 pockets (best druggability 0.35). MolNFT v1 #49206 on GenesisL1: 3D structure, binding…
- PDB
- 2QGZ
- Type
- protein
- Length
- 183 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative primosome component
- UniProt
- Q7CFF8
- Ligands
- PO4
- Pockets
- 2 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative primosome component | protein | 183 | 43% helix, 16% strand | Q7CFF8 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 74 | 0.35 | 0.77 | 18 | PO4 |
| 2 | 66 | 0.33 | 0.75 | 18 | empty |
Compared structures
- 2QGZ · Crystal structure of a putative primosome component from Streptococcus pyogenes serotype… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7CFF8
- Elsewhere: RCSB PDB 2QGZ · PDBe 2QGZ · UniProt Q7CFF8
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