MolNFT v1 · #49188 · protein

Human transthyretin (ttr) complexed with 2-(3,5-dibromo-4- HYDROXYPHENYL)BENZOXAZOLE

2QGD: “Human transthyretin (ttr) complexed with 2-(3,5-dibromo-4- HYDROXYPHENYL)BENZOXAZOLE”. X-ray diffraction, 1 ligand (MR5), 2 pockets (best druggability 0.33). MolNFT v1 #49188 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 2QGD
Type: protein
Length: 229 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Transthyretin
UniProt: P02766
Ligands: MR5
Pockets: 2 · best druggability 0.33

Structure

x-ray diffraction · 2 distinct chains · 6% helix, 52% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Transthyretin	protein	115	6% helix, 53% strand	P02766
B	Transthyretin	protein	114	6% helix, 52% strand	P02766

Ligands and binding sites

MR5 · 4-(1,3-benzoxazol-2-yl)-2,6-dibromophenol · ligand · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	53	0.33	0.77	13	empty
2	57	0.29	0.75	16	empty

Interfaces

1 interface between chains.

A–B · 903 Å² buried · 18 hydrogen bonds · protein-protein

Compared structures

2QGD · Human transthyretin (TTR) complexed with 2-(3,5-Dibromo-4-hydroxyphenyl)benzoxazole · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P02766
Elsewhere: RCSB PDB 2QGD · PDBe 2QGD · UniProt P02766

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