MolNFT v1 · #49183 · protein

Plasmodium yoelii acyl carrier protein synthase PY06285 with ADP bound

2QG8: “Plasmodium yoelii acyl carrier protein synthase PY06285 with ADP bound”. X-ray diffraction, 2 ligands (A3P, MG), 1 pocket (best druggability 0.30). MolNFT v1 #49183 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2QG8
Type: protein
Length: 137 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acyl carrier protein synthase PY06285
UniProt: Q7RB63
Ligands: A3P, MG
Pockets: 1 · best druggability 0.30

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 34% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acyl carrier protein synthase PY06285	protein	137	46% helix, 34% strand	Q7RB63

Ligands and binding sites

A3P · Adenosine-3'-5'-diphosphate · ligand · chains A
MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	59	0.30	0.75	10	empty

Compared structures

2QG8 · Plasmodium yoelii acyl carrier protein synthase PY06285 with ADP bound · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7RB63
Elsewhere: RCSB PDB 2QG8 · PDBe 2QG8 · UniProt Q7RB63

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