MolNFT v1 · #49125 · RNA
HIV-1 subtype F dis RNA extended duplex form
2QEK · HIV-1 subtype F dis genomic RNA: “HIV-1 subtype F dis RNA extended duplex form”. X-ray diffraction, 2 ligands (K, MG), 2 pockets (best druggability 0.52). MolNFT v1 #49125 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 2QEK
- Type
- RNA
- Length
- 46 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HIV-1 subtype F dis genomic RNA
- Ligands
- K, MG
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | HIV-1 subtype F dis genomic RNA | rna | 23 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 415 | 0.52 | 0.73 | 27 | MG, K |
| 2 | 219 | 0.42 | 0.73 | 18 | K |
Interfaces
1 interface between chains.
- A–B · 1072 Ų buried · 99 hydrogen bonds · nucleic-nucleic
Compared structures
- 2QEK · HIV-1 subtype F DIS RNA extended duplex form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2QEK · PDBe 2QEK
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.