MolNFT v1 · #49039 · RNA
Structure of the M-box riboswitch aptamer domain
2QBZ · M-box RNA, ykok riboswitch aptamer: “Structure of the M-box riboswitch aptamer domain”. X-ray diffraction, 2 ligands (MG, K), 6 pockets (best druggability 0.65). MolNFT v1 #49039 on GenesisL1: 3D structure, binding sites and pockets…
- PDB
- 2QBZ
- Type
- RNA
- Length
- 153 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- M-box RNA, ykok riboswitch aptamer
- Ligands
- MG, K
- Pockets
- 6 · best druggability 0.65
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| X | M-box RNA, ykok riboswitch aptamer | rna | 153 | — | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 410 | 0.65 | 0.80 | 35 | empty |
| 2 | 309 | 0.62 | 0.81 | 20 | empty |
| 3 | 309 | 0.62 | 0.80 | 19 | empty |
| 4 | 60 | 0.39 | 0.82 | 13 | empty |
| 5 | 92 | 0.37 | 0.77 | 16 | MG, K |
Compared structures
- 2QBZ · Structure of the M-Box Riboswitch Aptamer Domain · the same entry in another collection · chain X against X, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2QBZ · PDBe 2QBZ
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