MolNFT v1 · #48724 · protein
Crystal structure of uncharacterized protein (YP_323524.1) from anabaena variabilis atcc 29413 at 2.11 a resolution
2Q22: “Crystal structure of uncharacterized protein (YP_323524.1) from anabaena variabilis atcc 29413 at 2.11 a…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.53). MolNFT v1 #48724 on GenesisL1: 3D structure, binding…
- PDB
- 2Q22
- Type
- protein
- Length
- 389 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein
- UniProt
- Q3M8Q7
- Ligands
- CL
- Pockets
- 2 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 30% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein | protein | 130 | 30% helix, 26% strand | Q3M8Q7 |
| C | Uncharacterized protein | protein | 129 | 30% helix, 26% strand | Q3M8Q7 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A, B
- ACT · Acetate ion · additive · 4 copies · chains A, B, C
- PG4 · Tetraethylene glycol · additive · 2 copies · chains A, B
- EDO · 1,2-ethanediol · additive · 2 copies · chains C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 288 | 0.53 | 0.75 | 35 | empty |
| 2 | 245 | 0.51 | 0.75 | 32 | empty |
Interfaces
2 interfaces between chains.
- A–C · 337 Ų buried · 3 hydrogen bonds · protein-protein
- A–B · 330 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 6 modified (engineered).
Compared structures
- 2Q22 · Crystal structure of uncharacterized protein (YP_323524.1) from Anabaena variabilis ATCC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q3M8Q7
- Elsewhere: RCSB PDB 2Q22 · PDBe 2Q22 · UniProt Q3M8Q7
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