MolNFT v1 · #48530 · protein

Crystal structure of uncharacterized protein JW3007 from escherichia COLI K12

2PW6 · Uncharacterized protein ygid: “Crystal structure of uncharacterized protein JW3007 from escherichia COLI K12”. X-ray diffraction, 1 ligand (ZN), 1 pocket (best druggability 0.39). MolNFT v1 #48530 on GenesisL1: 3D structure, binding…

PDB: 2PW6
Type: protein
Length: 244 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein ygid
UniProt: P24197
Ligands: ZN
Pockets: 1 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 32% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Uncharacterized protein ygid	protein	244	32% helix, 20% strand	P24197

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	100	0.39	0.76	21	ZN

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

2PW6 · Crystal structure of uncharacterized protein JW3007 from Escherichia coli K12 · the same entry in another collection · chain A against A, TM-score 1.00
P24197 · AlphaFold monomer V2.0 prediction for 4,5-dopa dioxygenase extradiol (P24197) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P24197
Elsewhere: RCSB PDB 2PW6 · PDBe 2PW6 · UniProt P24197

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.