MolNFT v1 · #48439 · protein
Crystal structure of protein MTH_863 from methanobacterium thermoautotrophicum bound to FMN
2PTF · Uncharacterized protein MTH_863: “Crystal structure of protein MTH_863 from methanobacterium thermoautotrophicum bound to FMN”. X-ray diffraction, 1 ligand (FMN), 4 pockets (best druggability 0.72). MolNFT v1 #48439 on GenesisL1: 3D…
- PDB
- 2PTF
- Type
- protein
- Length
- 400 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein MTH_863
- UniProt
- O26951
- Ligands
- FMN
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 37% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Uncharacterized protein MTH_863 | protein | 200 | 35% helix, 37% strand | O26951 |
| B | Uncharacterized protein MTH_863 | protein | 200 | 37% helix, 36% strand | O26951 |
Ligands and binding sites
- FMN · Flavin mononucleotide · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 551 | 0.72 | 0.81 | 51 | empty |
| 2 | 664 | 0.72 | 0.79 | 49 | FMN |
| 3 | 600 | 0.70 | 0.78 | 47 | FMN |
| 4 | 54 | 0.24 | 0.72 | 15 | empty |
Interfaces
1 interface between chains.
- A–B · 1743 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 2PTF · Crystal structure of protein MTH_863 from Methanobacterium thermoautotrophicum bound to… · the same entry in another collection · chain A against A, TM-score 1.00
- O26951 · AlphaFold monomer V2.0 prediction for uncharacterized protein MTH_863 (O26951) · a predicted model of the same protein · chain B against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O26951
- Elsewhere: RCSB PDB 2PTF · PDBe 2PTF · UniProt O26951
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