MolNFT v1 · #48193 · protein

Crystal structure of the amidase from geobacillus pallidus RAPC8

2PLQ · Aliphatic amidase: “Crystal structure of the amidase from geobacillus pallidus RAPC8”. X-ray diffraction, 2 pockets (best druggability 0.45). MolNFT v1 #48193 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2PLQ
Type: protein
Length: 340 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Aliphatic amidase
EC: 3.5.1.4
UniProt: Q9L543
Pockets: 2 · best druggability 0.45

Structure

x-ray diffraction · 1 distinct chain · 33% helix, 24% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Aliphatic amidase (EC 3.5.1.4)	protein	340	33% helix, 24% strand	Q9L543

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	56	0.45	0.84	13	empty
2	77	0.30	0.72	15	empty

Compared structures

2PLQ · Crystal structure of the amidase from geobacillus pallidus RAPc8 · the same entry in another collection · chain A against A, TM-score 1.00
Q9L543 · AlphaFold monomer V2.0 prediction for aliphatic amidase (Q9L543) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9L543
Elsewhere: RCSB PDB 2PLQ · PDBe 2PLQ · UniProt Q9L543

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.