MolNFT v1 · #48191 · DNA
D-(gtatacc) low temperature (100K)
2PLO · 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3': “D-(gtatacc) low temperature (100K)”. X-ray diffraction, 1 ligand (NA). MolNFT v1 #48191 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2PLO
- Type
- DNA
- Length
- 16 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3'
- Ligands
- NA
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*DGP*DGP*DTP*DAP*DTP*DAP*DCP*DC)-3' | dna | 8 | — | — |
Ligands and binding sites
- NA · Sodium ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 370 Ų buried · 24 hydrogen bonds · nucleic-nucleic
Compared structures
- 2PLO · D-(GTATACC) low temperature (100K) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2PLO · PDBe 2PLO
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