MolNFT v1 · #48125 · protein
Ricin a-chain (recombinant) complex with N-methylurea
2PJO · Ricin (ec 3.2.2.22): “Ricin a-chain (recombinant) complex with N-methylurea”. X-ray diffraction, 2 ligands (NMU, SO4), 1 pocket (best druggability 0.62). MolNFT v1 #48125 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2PJO
- Type
- protein
- Length
- 258 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ricin (ec 3.2.2.22)
- EC
- 3.2.2.22
- UniProt
- P02879
- Ligands
- NMU, SO4
- Pockets
- 1 · best druggability 0.62
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ricin (ec 3.2.2.22) (EC 3.2.2.22) | protein | 258 | 41% helix, 23% strand | P02879 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 298 | 0.62 | 0.79 | 41 | NMU |
Compared structures
- 2PJO · Ricin a-chain (recombinant) complex with n-methylurea · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P02879
- Elsewhere: RCSB PDB 2PJO · PDBe 2PJO · UniProt P02879
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