MolNFT v1 · #48042 · protein
Crystal structure of nucleotide-binding protein AF2382 from archaeoglobus fulgidus, northeast structural genomics target GR165
2PH1: “Crystal structure of nucleotide-binding protein AF2382 from archaeoglobus fulgidus, northeast structural…”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.46). MolNFT v1 #48042 on GenesisL1: 3D structure, binding…
- PDB
- 2PH1
- Type
- protein
- Length
- 247 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Nucleotide-binding protein
- UniProt
- O30288
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 1 distinct chain · 33% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Nucleotide-binding protein | protein | 247 | 33% helix, 19% strand | O30288 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 140 | 0.46 | 0.77 | 28 | empty |
| 2 | 68 | 0.40 | 0.79 | 16 | empty |
Modifications
Observed in the structure: 7 modified (engineered).
Compared structures
- 2PH1 · Crystal structure of nucleotide-binding protein AF2382 from Archaeoglobus fulgidus… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O30288
- Elsewhere: RCSB PDB 2PH1 · PDBe 2PH1 · UniProt O30288
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