MolNFT v1 · #47978 · protein
Structure of bovine prothrombin fragment 1 refined at 2.25 ångströms resolution
2PF1: “Structure of bovine prothrombin fragment 1 refined at 2.25 ångströms resolution”. X-ray diffraction, 1 pocket (best druggability 0.38). MolNFT v1 #47978 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2PF1
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Prothrombin fragment 1
- UniProt
- P00735
- Pockets
- 1 · best druggability 0.38
Structure
x-ray diffraction · 1 distinct chain · 14% helix, 12% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Prothrombin fragment 1 | protein | 121 | 14% helix, 12% strand | P00735 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 66 | 0.38 | 0.78 | 20 | empty |
Modifications
Observed in the structure: 4 disulfide (disulfide).
Compared structures
- 2PF1 · Structure of bovine prothrombin fragment 1 refined at 2.25 ångströms resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00735
- Elsewhere: RCSB PDB 2PF1 · PDBe 2PF1 · UniProt P00735
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