MolNFT v1 · #47798 · protein
Crystal structure of putative prolidase from bifidobacterium longum
2P9B · Possible prolidase: “Crystal structure of putative prolidase from bifidobacterium longum”. X-ray diffraction, 3 pockets (best druggability 0.69). MolNFT v1 #47798 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2P9B
- Type
- protein
- Length
- 407 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Possible prolidase
- UniProt
- Q8G4D5
- Pockets
- 3 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 37% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Possible prolidase | protein | 407 | 37% helix, 20% strand | Q8G4D5 |
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 519 | 0.69 | 0.79 | 49 | empty |
| 2 | 106 | 0.42 | 0.78 | 22 | empty |
| 3 | 86 | 0.39 | 0.77 | 16 | empty |
Modifications
Observed in the structure: 10 modified (engineered).
Compared structures
- 2P9B · Crystal structure of putative prolidase from Bifidobacterium longum · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8G4D5
- Elsewhere: RCSB PDB 2P9B · PDBe 2P9B · UniProt Q8G4D5
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