MolNFT v1 · #47768 · DNA
The structure of the dickerson sequence with an incorporated cena residue
2P8D · 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR) P*DTP*DTP*DCP*DGP*DCP*DG)-3': “The structure of the dickerson sequence with an incorporated cena residue”. X-ray diffraction, 1 ligand (NCO). MolNFT v1 #47768 on GenesisL1: 3D structure, binding sites…
- PDB
- 2P8D
- Type
- DNA
- Length
- 23 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR) P*DTP*DTP*DCP*DGP*DCP*DG)-3'
- Ligands
- NCO
Structure
x-ray diffraction · 2 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR) P*DTP*DTP*DCP*DGP*DCP*DG)-3' | dna | 12 | — | — |
| B | 5'-D(*DCP*DGP*DCP*DGP*DAP*(XAR) P*DTP*DTP*DCP*DGP*DCP*DG)-3' | dna | 11 | — | — |
Ligands and binding sites
- NCO · Cobalt hexammine(iii) · ligand · 3 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Modifications
Observed in the structure: 2 modified (nucleotide modification).
Compared structures
- 2P8D · The Structure of the Dickerson Sequence with an Incorporated CeNA Residue · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 2P8D · PDBe 2P8D
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.