MolNFT v1 · #47766 · protein
Crystal structure of N-succinyl ARG/LYS racemase from bacillus cereus atcc 14579 complexed with N-succinyl lys.
2P8B · Mandelate RACEMASE/MUCONATE lactonizing enzyme family…: “Crystal structure of N-succinyl ARG/LYS racemase from bacillus cereus atcc 14579 complexed with N-succinyl…”. X-ray diffraction, 2 ligands (NSK, MG), 3 pockets (best…
- PDB
- 2P8B
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mandelate RACEMASE/MUCONATE lactonizing enzyme family protein
- UniProt
- Q81IL5
- Ligands
- NSK, MG
- Pockets
- 3 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 24% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mandelate RACEMASE/MUCONATE lactonizing enzyme family protein | protein | 369 | 40% helix, 24% strand | Q81IL5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 88 | 0.76 | 0.98 | 27 | NSK |
| 2 | 180 | 0.48 | 0.76 | 25 | empty |
| 3 | 87 | 0.41 | 0.78 | 20 | empty |
Compared structures
- 2P8B · Crystal structure of N-succinyl Arg/Lys racemase from Bacillus cereus ATCC 14579… · the same entry in another collection · chain A against A, TM-score 1.00
- Q81IL5 · AlphaFold monomer V2.0 prediction for N-succinyl-L-ARG/LYS racemase (Q81IL5) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81IL5
- Elsewhere: RCSB PDB 2P8B · PDBe 2P8B · UniProt Q81IL5
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