MolNFT v1 · #47725 · protein

Bombyx mori pheromone binding protein bound to iodohexadecane

2P71 · Pheromone-binding protein: “Bombyx mori pheromone binding protein bound to iodohexadecane”. X-ray diffraction, 1 ligand (IHD), 1 pocket (best druggability 0.83). MolNFT v1 #47725 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 2P71
Type: protein
Length: 132 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pheromone-binding protein
UniProt: P34174
Ligands: IHD
Pockets: 1 · best druggability 0.83

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 2% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pheromone-binding protein	protein	132	64% helix, 2% strand	P34174

Ligands and binding sites

IHD · 1-iodohexadecane · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	367	0.83	0.91	34	IHD

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

2P71 · Bombyx mori pheromone binding protein bound to iodohexadecane · the same entry in another collection · chain A against A, TM-score 1.00
P34174 · AlphaFold monomer V2.0 prediction for pheromone-binding protein (P34174) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P34174
Elsewhere: RCSB PDB 2P71 · PDBe 2P71 · UniProt P34174

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