MolNFT v1 · #4770 · protein

Murine endostatin, crystal form III

1DY1 · Collagen ALPHA1(XVIII) chain: “Murine endostatin, crystal form III”. X-ray diffraction, 1 ligand (ZN). MolNFT v1 #4770 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 1DY1
Type: protein
Length: 183 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Collagen ALPHA1(XVIII) chain
UniProt: P39061
Ligands: ZN

Structure

x-ray diffraction · 1 distinct chain · 18% helix, 25% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Collagen ALPHA1(XVIII) chain	protein	183	18% helix, 25% strand	P39061

Ligands and binding sites

ZN · Zinc ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

1DY1 · Murine endostatin, crystal form III · the same entry in another collection · chain A against A, TM-score 1.00
P39061 · AlphaFold monomer V2.0 prediction for collagen alpha-1(XVIII) chain (P39061) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P39061
Elsewhere: RCSB PDB 1DY1 · PDBe 1DY1 · UniProt P39061

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