MolNFT v1 · #47688 · protein

Crystal structure of thermus thermophilus HB8 udp-glucose 4-epimerase complex with NAD

2P5Y: “Crystal structure of thermus thermophilus HB8 udp-glucose 4-epimerase complex with NAD”. X-ray diffraction, 1 ligand (NAD), 2 pockets (best druggability 0.78). MolNFT v1 #47688 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 2P5Y
Type: protein
Length: 311 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Udp-glucose 4-epimerase
EC: 5.1.3.2
UniProt: Q5SKQ2
Ligands: NAD
Pockets: 2 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Udp-glucose 4-epimerase (EC 5.1.3.2)	protein	311	42% helix, 18% strand	Q5SKQ2

Ligands and binding sites

NAD · Nicotinamide-adenine-dinucleotide · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	361	0.78	0.88	49	NAD
2	434	0.69	0.81	38	empty

Compared structures

2P5Y · Crystal structure of Thermus thermophilus HB8 UDP-glucose 4-epimerase complex with NAD · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5SKQ2
Elsewhere: RCSB PDB 2P5Y · PDBe 2P5Y · UniProt Q5SKQ2

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