MolNFT v1 · #47656 · protein

Crystal structure of the S. pombe POP2P deadenylation subunit

2P51 · SPCC18.06C protein: “Crystal structure of the S. pombe POP2P deadenylation subunit”. X-ray diffraction, 1 ligand (MG), 1 pocket (best druggability 0.52). MolNFT v1 #47656 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2P51
Type: protein
Length: 255 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: SPCC18.06C protein
UniProt: O74856
Ligands: MG
Pockets: 1 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 44% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	SPCC18.06C protein	protein	255	44% helix, 13% strand	O74856

Ligands and binding sites

MG · Magnesium ion · metal · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	237	0.52	0.76	31	MG

Compared structures

2P51 · Crystal structure of the S. pombe Pop2p deadenylation subunit · the same entry in another collection · chain A against A, TM-score 1.00
O74856 · AlphaFold monomer V2.0 prediction for POLY(A) ribonuclease POP2 (O74856) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O74856
Elsewhere: RCSB PDB 2P51 · PDBe 2P51 · UniProt O74856

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