MolNFT v1 · #47618 · protein
Crystal structure of VPA0735 from vibrio parahaemolyticus. northeast structural genomics target VPR109
2P3Y · Hypothetical protein VPA0735: “Crystal structure of VPA0735 from vibrio parahaemolyticus. northeast structural genomics target VPR109”. X-ray diffraction, 4 pockets (best druggability 0.70). MolNFT v1 #47618 on GenesisL1: 3D…
- PDB
- 2P3Y
- Type
- protein
- Length
- 922 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein VPA0735
- UniProt
- Q87I71
- Pockets
- 4 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein VPA0735 | protein | 461 | 28% helix, 26% strand | Q87I71 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 225 | 0.70 | 0.86 | 51 | empty |
| 2 | 237 | 0.67 | 0.84 | 57 | empty |
| 3 | 68 | 0.30 | 0.74 | 17 | empty |
| 4 | 61 | 0.29 | 0.74 | 19 | empty |
Interfaces
1 interface between chains.
- A–B · 3596 Ų buried · 55 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 28 modified (engineered).
Compared structures
- 2P3Y · Crystal structure of VPA0735 from Vibrio parahaemolyticus. NorthEast Structural Genomics… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q87I71
- Elsewhere: RCSB PDB 2P3Y · PDBe 2P3Y · UniProt Q87I71
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.