MolNFT v1 · #47468 · protein

Crystal structure of a cupin superfamily protein (DSY2733) from desulfitobacterium hafniense dcb-2 at 1.60 a resolution

2OZJ · Cupin 2, conserved barrel: “Crystal structure of a cupin superfamily protein (DSY2733) from desulfitobacterium hafniense dcb-2 at 1.60 a…”. X-ray diffraction, 1 pocket (best druggability 0.72). MolNFT v1 #47468 on GenesisL1: 3D…

PDB: 2OZJ
Type: protein
Length: 219 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cupin 2, conserved barrel
UniProt: Q18ZY6
Pockets: 1 · best druggability 0.72

Structure

x-ray diffraction · 2 distinct chains · 4% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cupin 2, conserved barrel	protein	110	4% helix, 53% strand	Q18ZY6
B	Cupin 2, conserved barrel	protein	109	4% helix, 56% strand	Q18ZY6

Ligands and binding sites

GOL · Glycerol · additive · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	805	0.72	0.77	65	empty

Interfaces

1 interface between chains.

A–B · 513 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 7 modified (engineered).

Compared structures

2OZJ · Crystal structure of a cupin superfamily protein (DSY2733) from desulfitobacterium… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q18ZY6
Elsewhere: RCSB PDB 2OZJ · PDBe 2OZJ · UniProt Q18ZY6

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