MolNFT v1 · #47421 · protein
Crystal structure of the west nile virus methyltransferase
2OY0: “Crystal structure of the west nile virus methyltransferase”. X-ray diffraction, 1 ligand (SAH), 4 pockets (best druggability 0.67). MolNFT v1 #47421 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 2OY0
- Type
- protein
- Length
- 524 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Methyltransferase
- UniProt
- Q9Q6P4
- Ligands
- SAH
- Pockets
- 4 · best druggability 0.67
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Methyltransferase | protein | 262 | 34% helix, 13% strand | Q9Q6P4 |
Ligands and binding sites
- SAH · S-adenosyl-L-homocysteine · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 585 | 0.67 | 0.77 | 58 | SAH |
| 2 | 527 | 0.66 | 0.77 | 56 | SAH |
| 3 | 53 | 0.46 | 0.85 | 18 | empty |
| 4 | 55 | 0.46 | 0.84 | 16 | empty |
Interfaces
1 interface between chains.
- A–B · 196 Ų buried · 2 hydrogen bonds · protein-protein
Compared structures
- 2OY0 · Crystal structure of the West Nile virus methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Q6P4
- Elsewhere: RCSB PDB 2OY0 · PDBe 2OY0 · UniProt Q9Q6P4
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