MolNFT v1 · #47376 · protein
Crystal structure of a cystatin-like fold protein (BXE_B1374) from burkholderia xenovorans LB400 at 2.00 a resolution
2OWP · Hypothetical protein BXE_B1374: “Crystal structure of a cystatin-like fold protein (BXE_B1374) from burkholderia xenovorans LB400 at 2.00 a…”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.63). MolNFT v1 #47376…
- PDB
- 2OWP
- Type
- protein
- Length
- 258 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein BXE_B1374
- UniProt
- Q13MU9
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 28% helix, 40% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein BXE_B1374 | protein | 129 | 28% helix, 40% strand | Q13MU9 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A
- EDO · 1,2-ethanediol · additive · 14 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.63 | 0.84 | 30 | EDO |
| 2 | 149 | 0.63 | 0.85 | 28 | EDO |
Interfaces
1 interface between chains.
- A–B · 1520 Ų buried · 16 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 modified (engineered).
Compared structures
- 2OWP · Crystal structure of a cystatin-like fold protein (bxe_b1374) from burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q13MU9
- Elsewhere: RCSB PDB 2OWP · PDBe 2OWP · UniProt Q13MU9
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