MolNFT v1 · #47361 · protein
Crystal structure of putative GTPase activating protein for ADP ribosylation factor from cryptosporidium parvum (CGD5_1040)
2OWA · Arfgap-like finger domain containing protein: “Crystal structure of putative GTPase activating protein for ADP ribosylation factor from cryptosporidium…”. X-ray diffraction, 1 ligand (ZN), 2 pockets (best druggability 0.73). MolNFT…
- PDB
- 2OWA
- Type
- protein
- Length
- 254 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Arfgap-like finger domain containing protein
- UniProt
- Q5CRY1
- Ligands
- ZN
- Pockets
- 2 · best druggability 0.73
Structure
x-ray diffraction · 2 distinct chains · 51% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Arfgap-like finger domain containing protein | protein | 128 | 51% helix, 10% strand | Q5CRY1 |
| B | Arfgap-like finger domain containing protein | protein | 126 | 52% helix, 9% strand | Q5CRY1 |
Ligands and binding sites
- ZN · Zinc ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 348 | 0.73 | 0.85 | 48 | empty |
| 2 | 68 | 0.29 | 0.73 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 899 Ų buried · 7 hydrogen bonds · protein-protein
Compared structures
- 2OWA · Crystal structure of putative GTPase activating protein for ADP ribosylation factor from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5CRY1
- Elsewhere: RCSB PDB 2OWA · PDBe 2OWA · UniProt Q5CRY1
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