MolNFT v1 · #47306 · protein
Crystal structure of PDE10A2 in complex with AMP
2OUN · Camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase…: “Crystal structure of PDE10A2 in complex with AMP”. X-ray diffraction, 3 ligands (AMP, ZN, MG), 8 pockets (best druggability 0.74). MolNFT v1 #47306 on GenesisL1: 3D…
- PDB
- 2OUN
- Type
- protein
- Length
- 652 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase 10A
- EC
- 3.1.4.17
- UniProt
- Q9Y233
- Ligands
- AMP, ZN, MG
- Pockets
- 8 · best druggability 0.74
Structure
x-ray diffraction · 2 distinct chains · 70% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase 10A (EC 3.1.4.17) | protein | 324 | 72% helix, 0% strand | Q9Y233 |
| B | Camp and camp-inhibited cgmp 3',5'-cyclic phosphodiesterase 10A (EC 3.1.4.17) | protein | 328 | 68% helix, 0% strand | Q9Y233 |
Ligands and binding sites
- AMP · Adenosine monophosphate · ligand · chains A
- ZN · Zinc ion · metal · 2 copies · chains A, B
- MG · Magnesium ion · metal · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
8 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 691 | 0.74 | 0.80 | 70 | MG |
| 2 | 389 | 0.73 | 0.84 | 43 | MG, AMP |
| 3 | 769 | 0.72 | 0.77 | 69 | empty |
| 4 | 85 | 0.46 | 0.81 | 18 | empty |
| 5 | 108 | 0.43 | 0.78 | 22 | empty |
Interfaces
1 interface between chains.
- A–B · 847 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2OUN · crystal structure of PDE10A2 in complex with AMP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9Y233
- Elsewhere: RCSB PDB 2OUN · PDBe 2OUN · UniProt Q9Y233
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.