MolNFT v1 · #47266 · protein
Crystal structure of the complex formed between phospholipase A2 and atenolol at 1.95 a resolution
2OTF · Phospholipase A2 vrv-pl-viiia: “Crystal structure of the complex formed between phospholipase A2 and atenolol at 1.95 a resolution”. X-ray diffraction, 1 ligand (2TN), 1 pocket (best druggability 0.49). MolNFT v1 #47266 on…
- PDB
- 2OTF
- Type
- protein
- Length
- 121 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Phospholipase A2 vrv-pl-viiia
- EC
- 3.1.1.4
- UniProt
- P59071
- Ligands
- 2TN
- Pockets
- 1 · best druggability 0.49
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Phospholipase A2 vrv-pl-viiia (EC 3.1.1.4) | protein | 121 | 48% helix, 9% strand | P59071 |
Ligands and binding sites
- 2TN · 2-(4-(2-hydroxy-3-(isopropylamino)propoxy)phenyl)ethanamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 145 | 0.49 | 0.78 | 20 | 2TN |
Modifications
Observed in the structure: 7 disulfide (disulfide).
Compared structures
- 2OTF · Crystal structure of the complex formed between phospholipase A2 and atenolol at 1.95 A… · the same entry in another collection · chain A against A, TM-score 1.00
- P59071 · AlphaFold monomer V2.0 prediction for basic phospholipase A2 vrv-pl- viiia (P59071) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P59071
- Elsewhere: RCSB PDB 2OTF · PDBe 2OTF · UniProt P59071
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