MolNFT v1 · #47241 · protein
Crystal structure of a vinyl-4-reductase family protein (MJ_1460) from methanocaldococcus jannaschii dsm at 1.90 a resolution
2OSO · Hypothetical protein MJ1460: “Crystal structure of a vinyl-4-reductase family protein (MJ_1460) from methanocaldococcus jannaschii dsm at…”. X-ray diffraction, 2 ligands (ZN, CL), 2 pockets (best druggability 0.59). MolNFT v1 #47241…
- PDB
- 2OSO
- Type
- protein
- Length
- 157 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein MJ1460
- UniProt
- Q58855
- Ligands
- ZN, CL
- Pockets
- 2 · best druggability 0.59
Structure
x-ray diffraction · 1 distinct chain · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein MJ1460 | protein | 157 | 48% helix, 16% strand | Q58855 |
Ligands and binding sites
- ZN · Zinc ion · metal · chains A
- CL · Chloride ion · ion · chains A
- GOL · Glycerol · additive · 2 copies · chains A
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 399 | 0.59 | 0.75 | 36 | CL |
| 2 | 181 | 0.49 | 0.75 | 21 | empty |
Modifications
Observed in the structure: 5 modified (engineered).
Compared structures
- 2OSO · Crystal structure of a vinyl-4-reductase family protein (mj_1460) from methanocaldococcus… · the same entry in another collection · chain A against A, TM-score 1.00
- Q58855 · AlphaFold monomer V2.0 prediction for uncharacterized protein MJ1460 (Q58855) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q58855
- Elsewhere: RCSB PDB 2OSO · PDBe 2OSO · UniProt Q58855
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