MolNFT v1 · #4723 · protein

Structure of bacteriophage PP7 from pseudomonas aeruginosa at 3.7 a resolution

1DWN · Phage coat protein: “Structure of bacteriophage PP7 from pseudomonas aeruginosa at 3.7 a resolution”. X-ray diffraction, 8 pockets (best druggability 0.53). MolNFT v1 #4723 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 1DWN
Type: protein
Length: 381 residues
Chains: 3
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phage coat protein
UniProt: Q38062
Pockets: 8 · best druggability 0.53

Structure

x-ray diffraction · 1 distinct chain · 19% helix, 43% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B, C	Phage coat protein	protein	127	19% helix, 43% strand	Q38062

Pockets

8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	308	0.53	0.74	38	empty
2	281	0.51	0.74	40	empty
3	200	0.44	0.73	24	empty
4	146	0.41	0.74	19	empty
5	125	0.39	0.74	20	empty

Interfaces

3 interfaces between chains.

B–C · 479 Å² buried · 1 hydrogen bond · protein-protein
A–B · 452 Å² buried · 1 hydrogen bond · protein-protein
A–C · 335 Å² buried · 0 hydrogen bonds · protein-protein

Compared structures

1DWN · Structure of bacteriophage PP7 from Pseudomonas aeruginosa at 3.7 A resolution · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q38062
Elsewhere: RCSB PDB 1DWN · PDBe 1DWN · UniProt Q38062

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