MolNFT v1 · #47123 · protein

Peptide-binding domain of heat shock 70 kda protein D precursor from C.ELEGANS

2OP6: “Peptide-binding domain of heat shock 70 kda protein D precursor from C.ELEGANS”. X-ray diffraction, 2 pockets (best druggability 0.51). MolNFT v1 #47123 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2OP6
Type: protein
Length: 150 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Heat shock 70 kda protein D
UniProt: P20163
Pockets: 2 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 40% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Heat shock 70 kda protein D	protein	150	17% helix, 40% strand	P20163

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	121	0.51	0.80	19	empty
2	112	0.40	0.75	17	empty

Compared structures

2OP6 · Peptide-binding domain of Heat shock 70 kDa protein D precursor from C.elegans · the same entry in another collection · chain A against A, TM-score 1.00
P20163 · AlphaFold monomer V2.0 prediction for endoplasmic reticulum chaperone bip homolog (P20163) · a predicted model of the same protein · chain A against A, TM-score 0.71

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P20163
Elsewhere: RCSB PDB 2OP6 · PDBe 2OP6 · UniProt P20163

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.