MolNFT v1 · #47103 · protein

Crystal structure of a protein with unknown function (YP_749275.1) from shewanella frigidimarina ncimb 400 at 1.80 a resolution

2OOK · Hypothetical protein: “Crystal structure of a protein with unknown function (YP_749275.1) from shewanella frigidimarina ncimb 400 at…”. X-ray diffraction, 1 pocket (best druggability 0.58). MolNFT v1 #47103 on GenesisL1: 3D…

PDB: 2OOK
Type: protein
Length: 247 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q087X8
Pockets: 1 · best druggability 0.58

Structure

x-ray diffraction · 2 distinct chains · 28% helix, 38% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	125	26% helix, 38% strand	Q087X8
B	Hypothetical protein	protein	122	30% helix, 37% strand	Q087X8

Ligands and binding sites

EDO · 1,2-ethanediol · additive · 6 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	214	0.58	0.80	31	EDO

Interfaces

1 interface between chains.

A–B · 1529 Å² buried · 22 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 4 modified (engineered).

Compared structures

2OOK · Crystal structure of a protein with unknown function (YP_749275.1) from Shewanella… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q087X8
Elsewhere: RCSB PDB 2OOK · PDBe 2OOK · UniProt Q087X8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.