MolNFT v1 · #47102 · protein
Crystal structure of a protein with unknown function from DUF3224 family (SO_1590) from shewanella oneidensis mr-1 at 1.84 a resolution
2OOJ · Hypothetical protein: “Crystal structure of a protein with unknown function from DUF3224 family (SO_1590) from shewanella oneidensis…”. X-ray diffraction, 1 ligand (MSE), 2 pockets (best druggability 0.51). MolNFT v1 #47102 on…
- PDB
- 2OOJ
- Type
- protein
- Length
- 265 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q8EGL1
- Ligands
- MSE
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 0% helix, 71% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Hypothetical protein | protein | 131 | 0% helix, 70% strand | Q8EGL1 |
| B | Hypothetical protein | protein | 134 | 0% helix, 71% strand | Q8EGL1 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 168 | 0.51 | 0.77 | 26 | empty |
| 2 | 165 | 0.47 | 0.76 | 24 | empty |
Interfaces
1 interface between chains.
- A–B · 1798 Ų buried · 22 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified, 1 covalent (engineered, covalent ligand).
Compared structures
- 2OOJ · Crystal structure of a protein with unknown function from DUF3224 family (SO_1590) from… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8EGL1
- Elsewhere: RCSB PDB 2OOJ · PDBe 2OOJ · UniProt Q8EGL1
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