MolNFT v1 · #47086 · protein
Crystal structure of protein LPL1258 from legionella pneumophila str. philadelphia 1, pfam DUF519
2OO3 · Protein involved in catabolism of external DNA: “Crystal structure of protein LPL1258 from legionella pneumophila str. philadelphia 1, pfam DUF519”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.60). MolNFT v1…
- PDB
- 2OO3
- Type
- protein
- Length
- 267 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein involved in catabolism of external DNA
- UniProt
- Q5ZVZ2
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 41% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein involved in catabolism of external DNA | protein | 267 | 41% helix, 19% strand | Q5ZVZ2 |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 354 | 0.60 | 0.77 | 41 | empty |
| 2 | 58 | 0.28 | 0.74 | 15 | empty |
Compared structures
- 2OO3 · Crystal structure of protein LPL1258 from Legionella pneumophila str. Philadelphia 1… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5ZVZ2
- Elsewhere: RCSB PDB 2OO3 · PDBe 2OO3 · UniProt Q5ZVZ2
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