MolNFT v1 · #46980 · protein

The crystal structure of the acyl-CoA dehydrogenase family protein from porphyromonas gingivalis

2OKU: “The crystal structure of the acyl-CoA dehydrogenase family protein from porphyromonas gingivalis”. X-ray diffraction, 2 pockets (best druggability 0.37). MolNFT v1 #46980 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 2OKU
Type: protein
Length: 238 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Acyl-CoA dehydrogenase family protein
UniProt: Q7MW70
Pockets: 2 · best druggability 0.37

Structure

x-ray diffraction · 2 distinct chains · 87% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Acyl-CoA dehydrogenase family protein	protein	122	86% helix, 0% strand	Q7MW70
B	Acyl-CoA dehydrogenase family protein	protein	116	87% helix, 0% strand	Q7MW70

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	86	0.37	0.76	22	empty
2	50	0.29	0.76	13	empty

Interfaces

1 interface between chains.

A–B · 1194 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 8 modified (engineered).

Compared structures

2OKU · The crystal structure of the acyl-CoA dehydrogenase family protein from Porphyromonas… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q7MW70
Elsewhere: RCSB PDB 2OKU · PDBe 2OKU · UniProt Q7MW70

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