MolNFT v1 · #46868 · protein
Crystal structure of hypothetical molybdenum cofactor biosynthesis protein C from sulfolobus tokodaii
2OHD · Probable molybdenum cofactor biosynthesis protein C: “Crystal structure of hypothetical molybdenum cofactor biosynthesis protein C from sulfolobus tokodaii”. X-ray diffraction, 10 pockets (best druggability 0.83). MolNFT v1 #46868…
- PDB
- 2OHD
- Type
- protein
- Length
- 846 residues
- Chains
- 6
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Probable molybdenum cofactor biosynthesis protein C
- UniProt
- Q975D5
- Pockets
- 10 · best druggability 0.83
Structure
x-ray diffraction · 5 distinct chains · 35% helix, 31% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Probable molybdenum cofactor biosynthesis protein C | protein | 142 | 35% helix, 31% strand | Q975D5 |
| B | Probable molybdenum cofactor biosynthesis protein C | protein | 139 | 35% helix, 30% strand | Q975D5 |
| C | Probable molybdenum cofactor biosynthesis protein C | protein | 141 | 35% helix, 31% strand | Q975D5 |
| D, E | Probable molybdenum cofactor biosynthesis protein C | protein | 140 | 36% helix, 29% strand | Q975D5 |
| F | Probable molybdenum cofactor biosynthesis protein C | protein | 144 | 35% helix, 31% strand | Q975D5 |
Pockets
10 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 604 | 0.83 | 0.87 | 58 | empty |
| 2 | 599 | 0.81 | 0.86 | 51 | empty |
| 3 | 209 | 0.64 | 0.83 | 33 | empty |
| 4 | 192 | 0.59 | 0.82 | 34 | empty |
| 5 | 158 | 0.57 | 0.82 | 27 | empty |
Interfaces
15 interfaces between chains.
- C–E · 1908 Ų buried · 18 hydrogen bonds · protein-protein
- B–F · 1889 Ų buried · 22 hydrogen bonds · protein-protein
- A–D · 1882 Ų buried · 18 hydrogen bonds · protein-protein
- A–C · 727 Ų buried · 14 hydrogen bonds · protein-protein
- B–C · 695 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 2OHD · Crystal structure of hypothetical molybdenum cofactor biosynthesis protein C from… · the same entry in another collection · chain F against F, TM-score 1.00
- Q975D5 · AlphaFold monomer V2.0 prediction for probable cyclic pyranopterin monophosphate synthase… · a predicted model of the same protein · chain C against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q975D5
- Elsewhere: RCSB PDB 2OHD · PDBe 2OHD · UniProt Q975D5
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